论文标题

针对压缩冷冻的离子束扫描电子显微镜的有针对性的采样策略

A Targeted Sampling Strategy for Compressive Cryo Focused Ion Beam Scanning Electron Microscopy

论文作者

Nicholls, Daniel, Wells, Jack, Robinson, Alex W., Moshtaghpour, Amirafshar, Kobylynska, Maryna, Fleck, Roland A., Kirkland, Angus I., Browning, Nigel D.

论文摘要

冷冻浓缩的离子梁扫描电子显微镜(冷冻FIB-SEM)可以通过切片和视图机制对生物标本进行三维和纳米级成像。但是,FIB-SEM实验受到缓慢(通常是几个小时)的采集过程的限制,并且对梁敏感样本施加的高电子剂量可能会造成损害。在这项工作中,我们提出了一种压缩传感变体的冷冻FIB-SEM,能够降低操作电子剂量和增加速度。我们提出了两种有针对性的采样(TS)策略,以利用上一个样本层的重建图像作为设计下一个子采样掩码的先验。我们的图像恢复基于盲目的贝叶斯词典学习方法,即β过程因子分析(BPFA)。由于我们基于BPFA的超快速实施,该方法在实验上可行。对人工压缩FIB-SEM测量的模拟验证了提出的方法的成功:可将操作电子剂量降低20次。这些方法对低温FIB-SEM社区具有很大的影响,其中没有光束损伤的光束敏感生物材料的成像至关重要。

Cryo Focused Ion-Beam Scanning Electron Microscopy (cryo FIB-SEM) enables three-dimensional and nanoscale imaging of biological specimens via a slice and view mechanism. The FIB-SEM experiments are, however, limited by a slow (typically, several hours) acquisition process and the high electron doses imposed on the beam sensitive specimen can cause damage. In this work, we present a compressive sensing variant of cryo FIB-SEM capable of reducing the operational electron dose and increasing speed. We propose two Targeted Sampling (TS) strategies that leverage the reconstructed image of the previous sample layer as a prior for designing the next subsampling mask. Our image recovery is based on a blind Bayesian dictionary learning approach, i.e., Beta Process Factor Analysis (BPFA). This method is experimentally viable due to our ultra-fast GPU-based implementation of BPFA. Simulations on artificial compressive FIB-SEM measurements validate the success of proposed methods: the operational electron dose can be reduced by up to 20 times. These methods have large implications for the cryo FIB-SEM community, in which the imaging of beam sensitive biological materials without beam damage is crucial.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源