论文标题
基因表达自动调节的推断
Inference on autoregulation in gene expression
论文作者
论文摘要
一些基因可以促进或压抑自己的表达,这称为自动调节。尽管基因调节是生物学中的一个核心主题,但研究的研究要少得多。通常,很难通过直接的生化方法来确定自动调节的存在。然而,一些论文观察到某些类型的自动调节与基因表达中的噪声水平有关。我们通过两个命题将这些结果推广到离散状态连续时间马尔可夫链上。这两个命题形成了一种简单但可靠的方法,可以从基因表达数据中推断自动调节的存在。该方法只需要比较基因表达水平的均值和方差。与推断自动调节的其他方法相比,我们的方法仅需要一次性的一次性数据,并且不需要估计参数。此外,我们的方法对模型几乎没有限制。我们将此方法应用于四组实验数据,并找到一些可能具有自动调节的基因。通过实验或其他理论工作证实了一些推断的自动调节。
Some genes can promote or repress their own expressions, which is called autoregulation. Although gene regulation is a central topic in biology, autoregulation is much less studied. In general, it is extremely difficult to determine the existence of autoregulation with direct biochemical approaches. Nevertheless, some papers have observed that certain types of autoregulations are linked to noise levels in gene expression. We generalize these results by two propositions on discrete-state continuous-time Markov chains. These two propositions form a simple but robust method to infer the existence of autoregulation from gene expression data. This method only needs to compare the mean and variance of the gene expression level. Compared to other methods for inferring autoregulation, our method only requires non-interventional one-time data, and does not need to estimate parameters. Besides, our method has few restrictions on the model. We apply this method to four groups of experimental data and find some genes that might have autoregulation. Some inferred autoregulations have been verified by experiments or other theoretical works.