论文标题

通过统计和机器学习分析对血细胞转录组数据的疾病严重程度预测患者的疾病严重程度

Predicting Patient COVID-19 Disease Severity by means of Statistical and Machine Learning Analysis of Blood Cell Transcriptome Data

论文作者

Aktar, Sakifa, Ahamad, Md. Martuza, Rashed-Al-Mahfuz, Md., Azad, AKM, Uddin, Shahadat, Kamal, A H M, Alyami, Salem A., Lin, Ping-I, Islam, Sheikh Mohammed Shariful, Quinn, Julian M. W., Eapen, Valsamma, Moni, Mohammad Ali

论文摘要

简介:对于199名患者,准确预测疾病严重性和死亡率风险将大大改善护理的分配和资源分配。有许多与患者有关的因素,例如影响疾病严重程度的预先存在的合并症。由于周围血液样本的快速自动分析已广泛可用,因此我们研究了如何使用Covid-19患者外周血中的这些数据来预测临床结果。 方法:因此,我们通过将统计比较和相关方法与机器学习算法相结合,从而研究了来自COVID-19患者的临床数据集;后者包括决策树,随机森林,梯度提升机的变体,支持向量机,K-Nearest邻居和深度学习方法。 结果:我们的工作揭示了血样中可测量的几个临床参数,这些临床参数区分了健康的人和COVID-19-19阳性患者,并显示出可预测的价值,以证明COVID-19的后期严重程度。因此,我们开发了许多分析方法,这些方法表明疾病严重程度和死亡率预测的准确性和精度高于90%。 结论:总而言之,我们开发了分析患者常规临床数据的方法,这可以更准确地预测COVID-19患者预后。通过采用标准的医院实验室分析患者血液,可以利用这种方法来确定死亡率很高的患者,因此可以优化其治疗。

Introduction: For COVID-19 patients accurate prediction of disease severity and mortality risk would greatly improve care delivery and resource allocation. There are many patient-related factors, such as pre-existing comorbidities that affect disease severity. Since rapid automated profiling of peripheral blood samples is widely available, we investigated how such data from the peripheral blood of COVID-19 patients might be used to predict clinical outcomes. Methods: We thus investigated such clinical datasets from COVID-19 patients with known outcomes by combining statistical comparison and correlation methods with machine learning algorithms; the latter included decision tree, random forest, variants of gradient boosting machine, support vector machine, K-nearest neighbour and deep learning methods. Results: Our work revealed several clinical parameters measurable in blood samples, which discriminated between healthy people and COVID-19 positive patients and showed predictive value for later severity of COVID-19 symptoms. We thus developed a number of analytic methods that showed accuracy and precision for disease severity and mortality outcome predictions that were above 90%. Conclusions: In sum, we developed methodologies to analyse patient routine clinical data which enables more accurate prediction of COVID-19 patient outcomes. This type of approaches could, by employing standard hospital laboratory analyses of patient blood, be utilised to identify, COVID-19 patients at high risk of mortality and so enable their treatment to be optimised.

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