论文标题
桥接2D和3D分割网络用于计算有效的体积医学图像分割:2.5D解决方案的经验研究
Bridging 2D and 3D Segmentation Networks for Computation Efficient Volumetric Medical Image Segmentation: An Empirical Study of 2.5D Solutions
论文作者
论文摘要
最近,深层卷积神经网络在医疗图像分割方面取得了巨大的成功。但是,与自然图像的分割不同,大多数医学图像(例如MRI和CT)都是体积数据。为了充分利用体积信息,3D CNN被广泛使用。但是,3D CNN的推理时间和计算成本较高,这阻碍了他们进一步的临床应用。此外,随着参数数量的增加,过度拟合的风险更高,尤其是对于数据和注释昂贵的医学图像而言。为了发出此问题,已经提出了许多2.5D分割方法,以利用体积空间信息,计算成本较少。尽管这些工作导致了各种分割任务的改进,但据我们所知,这些方法以前没有进行大规模的经验比较。在本文中,我们旨在介绍2.5d方法的最新发展,用于体积医学图像分割。此外,为了比较这些方法的性能和有效性,我们在三个涉及不同方式和目标的代表性分割任务上提供了这些方法的经验研究。我们的实验结果表明,3D CNN可能并不总是最好的选择。尽管所有这些2.5D方法都可以将性能提高到2D基线,但并非所有方法都在不同的数据集上持有好处。我们希望我们的研究的结果和结论对社区探索和开发有效的体积医学图像分割方法有用。
Recently, deep convolutional neural networks have achieved great success for medical image segmentation. However, unlike segmentation of natural images, most medical images such as MRI and CT are volumetric data. In order to make full use of volumetric information, 3D CNNs are widely used. However, 3D CNNs suffer from higher inference time and computation cost, which hinders their further clinical applications. Additionally, with the increased number of parameters, the risk of overfitting is higher, especially for medical images where data and annotations are expensive to acquire. To issue this problem, many 2.5D segmentation methods have been proposed to make use of volumetric spatial information with less computation cost. Despite these works lead to improvements on a variety of segmentation tasks, to the best of our knowledge, there has not previously been a large-scale empirical comparison of these methods. In this paper, we aim to present a review of the latest developments of 2.5D methods for volumetric medical image segmentation. Additionally, to compare the performance and effectiveness of these methods, we provide an empirical study of these methods on three representative segmentation tasks involving different modalities and targets. Our experimental results highlight that 3D CNNs may not always be the best choice. Despite all these 2.5D methods can bring performance gains to 2D baseline, not all the methods hold the benefits on different datasets. We hope the results and conclusions of our study will prove useful for the community on exploring and developing efficient volumetric medical image segmentation methods.