论文标题

COVID-19患者结果预测的综合分析

Integrative Analysis for COVID-19 Patient Outcome Prediction

论文作者

Chao, Hanqing, Fang, Xi, Zhang, Jiajin, Homayounieh, Fatemeh, Arru, Chiara D., Digumarthy, Subba R., Babaei, Rosa, Mobin, Hadi K., Mohseni, Iman, Saba, Luca, Carriero, Alessandro, Falaschi, Zeno, Pasche, Alessio, Wang, Ge, Kalra, Mannudeep K., Yan, Pingkun

论文摘要

虽然对COVID-19诊断的胸部计算机断层扫描(CT)的图像分析进行了深入的研究,但几乎没有对基于图像的患者预测进行的工作。由于大多数患者自然康复,因此对早期干预的高危患者进行早期干预是降低Covid-19-19肺炎的死亡率的关键。因此,在初次介绍时对基线成像的疾病进展的准确预测可以帮助患者管理。仅代替通过深度学习的图像分割来代替肺部异常和特征的大小和体积信息,在这里,我们结合了肺部不透性的放射组学和人口统计数据,生命体征和实验室发现的非象征特征,以预测需要重新护理单位(ICU)入学。据我们所知,这是第一项使用患者的整体信息(包括成像和非成像数据)进行预测的研究。对从三家医院分别收集的数据集对所提出的方法进行了彻底评估,其中一家在伊朗,另一种在意大利,共有295例逆转录聚合酶链反应(RT-PCR)测定阳性covid-199肺炎。我们的实验结果表明,添加非成像功能可以显着提高预测的性能,以达到高达0.884的AUC和高达96.1%的敏感性,这对于在管理Covid-19患者中提供临床决策支持可能是有价值的。我们的方法也可以应用于其他肺部疾病,包括但不限于社区获得的肺炎。我们工作的源代码可在https://github.com/dial-rpi/covid19-icuprediction上获得。

While image analysis of chest computed tomography (CT) for COVID-19 diagnosis has been intensively studied, little work has been performed for image-based patient outcome prediction. Management of high-risk patients with early intervention is a key to lower the fatality rate of COVID-19 pneumonia, as a majority of patients recover naturally. Therefore, an accurate prediction of disease progression with baseline imaging at the time of the initial presentation can help in patient management. In lieu of only size and volume information of pulmonary abnormalities and features through deep learning based image segmentation, here we combine radiomics of lung opacities and non-imaging features from demographic data, vital signs, and laboratory findings to predict need for intensive care unit (ICU) admission. To our knowledge, this is the first study that uses holistic information of a patient including both imaging and non-imaging data for outcome prediction. The proposed methods were thoroughly evaluated on datasets separately collected from three hospitals, one in the United States, one in Iran, and another in Italy, with a total 295 patients with reverse transcription polymerase chain reaction (RT-PCR) assay positive COVID-19 pneumonia. Our experimental results demonstrate that adding non-imaging features can significantly improve the performance of prediction to achieve AUC up to 0.884 and sensitivity as high as 96.1%, which can be valuable to provide clinical decision support in managing COVID-19 patients. Our methods may also be applied to other lung diseases including but not limited to community acquired pneumonia. The source code of our work is available at https://github.com/DIAL-RPI/COVID19-ICUPrediction.

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