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Multi-objective task scheduling (MOTS) is the task scheduling while optimizing multiple and possibly contradicting constraints. A challenging extension of this problem occurs when every individual task is a multi-objective optimization problem by itself. While deep reinforcement learning (DRL) has been successfully applied to complex sequential problems, its application to the MOTS domain has been stymied by two challenges. The first challenge is the inability of the DRL algorithm to ensure that every item is processed identically regardless of its position in the queue. The second challenge is the need to manage large queues, which results in large neural architectures and long training times. In this study we present MERLIN, a robust, modular and near-optimal DRL-based approach for multi-objective task scheduling. MERLIN applies a hierarchical approach to the MOTS problem by creating one neural network for the processing of individual tasks and another for the scheduling of the overall queue. In addition to being smaller and with shorted training times, the resulting architecture ensures that an item is processed in the same manner regardless of its position in the queue. Additionally, we present a novel approach for efficiently applying DRL-based solutions on very large queues, and demonstrate how we effectively scale MERLIN to process queue sizes that are larger by orders of magnitude than those on which it was trained. Extensive evaluation on multiple queue sizes show that MERLIN outperforms multiple well-known baselines by a large margin (>22%).