论文标题
用于计算机辅助分子设计的深度学习和基于知识的方法 - 迈向统一方法:最先进和未来的方向
Deep Learning and Knowledge-Based Methods for Computer Aided Molecular Design -- Toward a Unified Approach: State-of-the-Art and Future Directions
论文作者
论文摘要
通过在分子水平上操纵性能的最佳设计通常是相当大的科学进步和改善过程系统性能的关键。本文强调了基于计算机辅助分子设计(CAMD)问题的关键趋势,挑战和机会。首先提出了对知识驱动的属性估计方法和解决方案技术以及相应的CAMD工具和应用的简要回顾。考虑到困扰基于知识的方法和技术的计算挑战,我们调查了深度学习对分子设计的最新应用,作为克服计算限制并导航化学空间未知领域的肥沃方法。调查的主要重点是在各种深度学习体系结构和不同分子表示下的分子的深层生成建模。此外,基准测试和经验严格在建立深度学习模型中的重要性令人着迷。综述文章还详细介绍了基于知识和数据驱动的CAMD的当前观点和挑战,并确定了未来研究方向的关键领域。特别强调了混合建模范式的肥沃大道,其中利用深度学习的方法在利用知识驱动的CAMD方法和工具的积累。
The optimal design of compounds through manipulating properties at the molecular level is often the key to considerable scientific advances and improved process systems performance. This paper highlights key trends, challenges, and opportunities underpinning the Computer-Aided Molecular Design (CAMD) problems. A brief review of knowledge-driven property estimation methods and solution techniques, as well as corresponding CAMD tools and applications, are first presented. In view of the computational challenges plaguing knowledge-based methods and techniques, we survey the current state-of-the-art applications of deep learning to molecular design as a fertile approach towards overcoming computational limitations and navigating uncharted territories of the chemical space. The main focus of the survey is given to deep generative modeling of molecules under various deep learning architectures and different molecular representations. Further, the importance of benchmarking and empirical rigor in building deep learning models is spotlighted. The review article also presents a detailed discussion of the current perspectives and challenges of knowledge-based and data-driven CAMD and identifies key areas for future research directions. Special emphasis is on the fertile avenue of hybrid modeling paradigm, in which deep learning approaches are exploited while leveraging the accumulated wealth of knowledge-driven CAMD methods and tools.