论文标题
Rocnreg:用于接收器操作特征曲线的R软件包,具有和不协变信息
ROCnReg: An R Package for Receiver Operating Characteristic Curve Inference with and without Covariate Information
论文作者
论文摘要
接收器操作特性(ROC)曲线是最受欢迎的工具,用于评估在区分两个替代性疾病状态(例如,患病和未疾病)时,以连续规模测量的诊断测试/生物标志物的歧视能力。在某些情况下,测试的性能及其歧视能力可能会根据特定于主题的特征或不同的测试设置而有所不同。在这种情况下,需要提供特定于信息的精度度量,例如协变量特异性和协变量调整后的ROC曲线,因为忽略协变量信息可能会导致偏见或错误的结果。本文介绍了R包ROCNREG,该ROCNREG允许通过不同方法估算汇集(未调整的)ROC曲线,协变量特异性ROC曲线以及通过(SEMI)参数和非参数和非参数的观点以及Bayesian和bayesian和parteist paradigms中的不同方法。从估计的ROC曲线(合并,协变量特异性或协变量调整)中,可以获得几种准确性的摘要度量,例如ROC曲线下的(部分)区域和Youden指数。该软件包还提供了使用多个标准获得基于ROC的最佳阈值值的功能,即Youden索引标准和为假阳性分数设定目标值的标准。对于贝叶斯方法,我们提供了通过后验预测检查评估模型拟合的工具,而模型选择可以通过多个信息标准进行。为所有方法提供了数值和图形输出。通过对内分泌研究的数据分析来说明该软件包,其目的是评估体重指数检测心血管疾病危险因素的存在或不存在的能力。该软件包可从https://cran.r-project.org/package=rocnreg获得。
The receiver operating characteristic (ROC) curve is the most popular tool used to evaluate the discriminatory capability of diagnostic tests/biomarkers measured on a continuous scale when distinguishing between two alternative disease states (e.g, diseased and nondiseased). In some circumstances, the test's performance and its discriminatory ability may vary according to subject-specific characteristics or different test settings. In such cases, information-specific accuracy measures, such as the covariate-specific and the covariate-adjusted ROC curve are needed, as ignoring covariate information may lead to biased or erroneous results. This paper introduces the R package ROCnReg that allows estimating the pooled (unadjusted) ROC curve, the covariate-specific ROC curve, and the covariate-adjusted ROC curve by different methods, both from (semi) parametric and nonparametric perspectives and within Bayesian and frequentist paradigms. From the estimated ROC curve (pooled, covariate-specific or covariate-adjusted), several summary measures of accuracy, such as the (partial) area under the ROC curve and the Youden index, can be obtained. The package also provides functions to obtain ROC-based optimal threshold values using several criteria, namely, the Youden Index criterion and the criterion that sets a target value for the false positive fraction. For the Bayesian methods, we provide tools for assessing model fit via posterior predictive checks, while model choice can be carried out via several information criteria. Numerical and graphical outputs are provided for all methods. The package is illustrated through the analyses of data from an endocrine study where the aim is to assess the capability of the body mass index to detect the presence or absence of cardiovascular disease risk factors. The package is available from CRAN at https://CRAN.R-project.org/package=ROCnReg.